March 17, 2010 3

Scientific Publishing and Web 2.0 survey: Call for participants

By in Social Media, Surveys, Web 2.0

Judith Simon and Diego Ponte from the LiquidPub project are seeking participants for a a survey about scientific publishing and the Web 2.0.

The aim of the survey is to gauge the potential acceptance of a Web 2.0 inspired production and dissemination of scientific publications by different scientific communities and by practitioners. The survey is hence tailored for researchers in all domains as well as for people working in the publishing industry.


Judith promised to report back on the results of the survey :)

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March 17, 2010 9

Paperpile: A new kid on the block

By in Computing tips, Early-adopter, Reference management, Software

The first public beta of Paperpile–the latest entry in the crowded arena of free reference management software–has been recently announced. As I write, a test version is available for Linux, but Mac and Windows versions should be released soon. From the screenshots gallery, it looks like Paperpile will feature a streamlined (although quite typical) 3-column interface, support for tags/labels as well as the standard Web import functionality from online bibliographic databases.

paperpile screenshot

It will be interesting to see how this software compares with cross-platform biggies such as Mendeley or established tools for specific environments such as BibDesk or JabRef.

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February 14, 2010 4

Tenure denial starts shooting, kills three. Columbine in the academia?

By in Announcements, News

This is a quick note that may not surprise most people. Amy Bishop, at University of Alabama  Huntsville, just killed three colleagues and injured some more. It seems that this act may be related to having been denied tenure.  A PhD from Harvard, Amy Bishop had grants, and sat in a startup board, which are traces of a successful academic career. She was also a mother of four. Can your academic job environment be so toxic as to motivate murder? She was possibly suffering major depression at the time of the incident, and other mental health issues.

The evidence that an academic career is too stressing is piling up. An academic deals with rejection very often, from both peers and students, gets paid like a boy scout, and works every waking hour. This should be a waking call to all academics that feel tenure is the center of their lives.

A Previous Shooting Death at the Hands of Alabama Suspect – NYTimes.com

UPDATE: removed wrong photo.

January 29, 2010 4

Introducing citeproc-js

By in Computing tips, Early-adopter, FOSS, Reference management, Software, Web 2.0, Writing

Citation copy-editing is one of those deceptively small burdens that have a way of taking over the working day. If left untended, the task of tidying up casually scribbled references can snowball to crisis proportions as a submission deadline approaches. Similarly, when a submission to one publisher is unsuccessful, significant effort may be required to recast its citations in the format required by another. Collaboration outside of one’s own field can bring with it an unwelcome tangle of fresh style-guide quandaries to ponder and fight through. These are things that the machines, if they want to make themselves useful, should be doing for us.

There is plenty of collective experience in this line, and as fate would have it, there are also plenty of collective solutions. In the TeX/LaTeX world, authors and their editors can today choose between BibTeX and BibLaTeX — both of them excellent utilities — with the several variants of the former supported by no fewer than four separate versions of the BibTeX program. [1] Users of WYSIWYG word processors can look to the bibliographic support built into Word or Open Office, or they can turn to an external solution such as EndNote ™, ProCite ™, Reference Manager ™, or more recently Zotero or Mendeley. Migrating data between these environments is a process fraught with uncertainty, but it is sometimes unavoidable when you need this kind of output, and it can only be produced on that kind of system …

Read the rest of this entry »

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January 24, 2010 4

LaTeXSearch: 1M snippets in a searchable database

By in Computing tips, e-Science, Resources, Search, Writing

Springer announced last week the launch of LaTeXSearch.com, a free online service allowing users to search a huge database of LaTeX snippets from Springer journals and publications. This follows the launch of a similar service, a few months ago exposing Springer’s database of scientific images (which suggests a precise strategy on how to build Web services on top of content in their publication database).

LaTeXSearch does what it promises, using similarity algorithms “to normalize and compare LaTeX strings so that, if similar equations are written slightly differently, the outputs are normalized and matched, granting you the broadest possible results set”. The only glitch is that snippets are not cached but generated on the fly, with the annoying result that it can take quite some time to display the rendered version of LaTeX formulas in search results.

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