June 21, 2012 1

Academic papers today are not meant to be discussion forums

By in Blog, e-Science, Opinion, Writing

This excellent post covers why academic publishing is obsolete. TL;DR:

1. The time lag is huge; it’s measured in months, or even years.

2. Most academic publications are inaccessible outside universities.

3. Virtually no one reads most academic publications.

4. It’s very unusual to make successful philosophical arguments in paper form.
5. Papers don’t have prestige outside a narrow subset of society.
6. Getting people to read papers is difficult.

7. Academia selects for conformity.

8. Papers have a tradition of violating the bottom line rule.

9. Academic moderation is both very strict and badly run.

Of course, one could argue that Academic papers today are not meant to be discussion forums. Still, blogging, continuous deployment, etc. make academic publishing feel archaic.

I’m writing something on why github could be a good model, I’ll publish it soon.

 

February 22, 2012 2

The importance of rewriting

By in Reading, Writing

Most academics really want to improve their writing, because good writing increases your chances of getting your manuscript accepted. Still, I think the academic system doesn´t reward good writing as much as it should.

The best advice I´ve seen recently on how to become a better writer is this quora post by Venkatesh Rao. He pins any quality improvements to rewriting:

The HUGE difference between everyday writing that everybody does and serious writing is the proportion that is re-writing. I’d estimate that for non-writers, rewriting accounts for maybe 10-20% of their writing. For serious writers, it accounts for anywhere between 50-90% depending on how critical the particular piece is.

I´m not sure how much rewriting goes into your average paper, but those numbers ring true for me. This makes things simpler: if you want to improve as a writer, focus on your rewriting skill. This is solid advice. Now I understand why doing revisions of a paper feels so tiresome: it’s not necessarily boredom, it’s the fact that rewriting is more effortful than actual writing.

January 30, 2012 0

To RSS subscribers: sorry, last post was not intended for ap.com

By in Announcements, Blog

The explanation below may only make sense to you if you read this from an RSS reader. If you don’t please skip it.

Have you ever sent an email to the wrong person? Did wish you could pull it back? I just did this, but for our blog (!).

I was feeding a WP install of what will be our company blog, and then I did something nasty…

I was about to post from my desktop tool (word 2010, used to be live writer), and I hit ‘post’ on the wrong doc, and ‘about’ page, ‘google-translated’ from German; prose as horrible as one can get. The blog selected was academicproductivity.com, not our own. I immediately went to the admin page and removed it, so ap.com’s readers won’t see it. But the RSS feed… is another story. For a blog that was dead for a year, we still have >4000 followers. This was the first post to break a long silent stretch. I’d hate if you, the reader, think we resurrected, just to find out a nonsensical blog post.

Since we use feedburner, removing the post locally didn’t help. I had to log in at feedburner, and try to remove it from there. They have a ‘nuke’ option that should force a refresh. But it just didn’t work. I tried a few times, the nonsensical blog post was still there. The only option I could think of was to delete the feed from feedburner, in the hope that they do not broadcast it. But it was too late; all people who subscribe to ap.com’s RSS feed have received the post.

I apologize for kidnapping your attention without a good reason. I’m sorry you got involved in this, but silly mistakes do occur. I will be more careful in the future.

Since the feedburner feed is now gone, if you want to continue receiving updates from ap.com you’d need to resubscribe. Simply click again on the RSS icon on the address bar, and follow the steps there. In any case, we are not dead, and will continue writing for ap.com whenever we find something worth writing about.

January 29, 2012 0

When your users tell you ‘you are not adding value’: Boycott against Elsevier

By in e-Science, Writing

Scott Aaronson uses an analogy to the game industry to describe the predicament academics are in:

I have an ingenious idea for a company. My company will be in the business of selling computer games.

But, unlike other computer game companies, mine will never have to hire a single programmer, game designer, or graphic artist. Instead I’ll simply find people who know how to make games, and ask them to donate their games to me. Naturally, anyone generous enough to donate a game will immediately relinquish all further rights to it. From then on, I alone will be the copyright-holder, distributor, and collector of royalties.

This is not to say, however, that I’ll provide no “value-added.” My company will be the one that packages the games in 25-cent cardboard boxes, then resells the boxes for up to $300 apiece.

But why would developers donate their games to me? Because they’ll need my seal of approval. I’ll convince developers that, if a game isn’t distributed by my company, then the game doesn’t “count”—indeed, barely even exists—and all their labor on it has been in vain.

As crazy as it sounds, this is exactly the situation with academic publishers. The ‘status quo’ is such that young researchers must publish on established journals (to gain the “seal of approval”). For older researchers, switching to open access publishing doesn’t pay off either: it’d show they don’t believe in the value the journals bring, and they are often editors of those (!).

And this is how the current academic publishing industry survives without adding much value. Survival is not the right word, because the leading firms still carry themselves around with arrogance. At the 2010 Semantic Web conference in Shanghai Jay Katzen, a keynote speaker from Elsevier, announced a big project on using the data on papers to create widgets. The API would allow people to do mashups with scientific data, that could be displayed on the publisher’s page. It was sold as “a new paradigm in the way research information is discovered, used, shared and re-used to accelerate science.” The reaction from the audience was instantaneous: “are you telling us that, not happy with monetizing the data and content we freely give you, you want us to build applications using that content for you to sell?”. The answer was honest: “… huh… yes.”

Today, many journal articles are online. In fact, the papers are often on the author’s homepage, and a simple query on google scholar or MS research search will find them. It is hard to imagine what value a publisher adds here.

However, the alternative is not clear. Open access publishing finds it difficult to obtain sustainable sources of financing. PLoS, the Public Library of Science, is financially sustainable, but ArXiv is struggling.

“Now it’s up to the rest of us to supply the anger.” Says Scott. Now more than 800 researchers have declared a boycott against Elsevier, up from 500 yesterday afternoon. Looks like the anger is there.

(An apology for the lack of posting. Dario has moved on to a position as senior researcher at Wikimedia, and I will be working on my startup full-time in a month. Often, I’ve seen blogpost-worthy issues, but I just didn’t have the mental bandwidth to follow up).

March 23, 2011 0

Bollocks to waiting 10 years for progress

By in e-Science, Early-adopter, Open data, Social Media, Software, Web 2.0, Wikis
Open Data warrior Mark Hahnel (@science3point0), the creator of FigShare, explains in this guest post the motivation behind the project and asks researchers why they aren’t publishing their research data.

I read a good quote the other day:

“Bollocks to waiting 10 years for progress. I want people to know about it now, and then do something about it” – Dr Paul Fisher

So why do we wait? Why isn’t there immediate publication, analysis and dissemination of data? Publication of Scientific data as it stands is a broken business model…for the most part. The advent of journals like PLoS and their subsequent success shows that the scientific community is taking note of what steps need to be taken. In my short life as a scientist, there has always been one thing that really annoys me. The inefficiency of scientific publishing and subsequent global sharing of knowledge. In terms of making significant advances available to wide audiences as peer reviewed publications, PLoS has it covered. But what about the rest of your research?

What percentage of the figures that went into your undergrad, masters or doctorate thesis were ever published? The ones that you didnt publish were probably good basic science, or figures that didnt tell a complete story. As a PhD student, I became very aware of the fact that a large amount of my data, although good, would never be published as it did not show significant differences. I then began wondering how many times experiments had been repeated globally unnecessarily. And so FigShare started life as an idea for researchers to publish all of their data that would otherwise never leave their lab books. By categorising and tagging the research, it becomes very searchable and other scientists should not reproduce experiments and waste money when they have been conducted several times by other labs. Following the alpha release, FigShare received a lot of attention and a lot of feedback. This caused the site to develop and it now allows the upload of Figures, Datasets and most recently media (eg. videos).
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