Archive for category: Reference management

Mendeley goes open

August 19th, 2010 by dario

After a few months of private testing, Mendeley announced the public release of their open API. This will allow developers and researchers to build applications and data analysis on top of a massive database of human-annotated scientific references.

We are excited to see our friends at Mendeley push forward on the open science front by making their database accessible to third parties and I look forward to seeing what developers will build on top of this data goldmine. In the meantime, check out the Mendeley Developer Portal or follow the dedicated twitter account for updates.

SciSurfer: real-time search on journal articles

May 5th, 2010 by jose

Imagine a world where real-time search is the norm. You will get just the information you seek landing on your lap the exact minute it becomes available, without you having to explicitly search for it. Will this change the way you do science? SciSurfer thinks it will.

The release cycle of scientific knowledge is slow. It may take up to 2 years for a paper to get accepted in a journal. The publishing process in itself will add a buffer of a few months (arguably because of the time cost of having a paper edition, even though most people will never use it). So, for some of us, it doesn’t feel like we are missing much if we do not get the latest updates on our field the very same minute they are published. Just going to conferences yearly feels like more than enough. But there is a portion of the academia that needs constant updates on their field, as close to real-time as possible. If you are in the life sciences, getting the latest paper about a molecule or a gene you work on before your competitor does may make or break your career.

For those academics, sciSurfer may be a very valuable tool. The basic idea of sciSurfer is to integrate all journal feeds and search over them. Note that they do not archive RSS, so only the latest articles are available. This is a different way to think about search, closer to twitter’s than to Google’s.

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Paperpile: A new kid on the block

March 17th, 2010 by dario

The first public beta of Paperpile–the latest entry in the crowded arena of free reference management software–has been recently announced. As I write, a test version is available for Linux, but Mac and Windows versions should be released soon. From the screenshots gallery, it looks like Paperpile will feature a streamlined (although quite typical) 3-column interface, support for tags/labels as well as the standard Web import functionality from online bibliographic databases.

paperpile screenshot

It will be interesting to see how this software compares with cross-platform biggies such as Mendeley or established tools for specific environments such as BibDesk or JabRef.

Introducing citeproc-js

January 29th, 2010 by Frank Bennett

Citation copy-editing is one of those deceptively small burdens that have a way of taking over the working day. If left untended, the task of tidying up casually scribbled references can snowball to crisis proportions as a submission deadline approaches. Similarly, when a submission to one publisher is unsuccessful, significant effort may be required to recast its citations in the format required by another. Collaboration outside of one’s own field can bring with it an unwelcome tangle of fresh style-guide quandaries to ponder and fight through. These are things that the machines, if they want to make themselves useful, should be doing for us.

There is plenty of collective experience in this line, and as fate would have it, there are also plenty of collective solutions. In the TeX/LaTeX world, authors and their editors can today choose between BibTeX and BibLaTeX — both of them excellent utilities — with the several variants of the former supported by no fewer than four separate versions of the BibTeX program. [1] Users of WYSIWYG word processors can look to the bibliographic support built into Word or Open Office, or they can turn to an external solution such as EndNote ™, ProCite ™, Reference Manager ™, or more recently Zotero or Mendeley. Migrating data between these environments is a process fraught with uncertainty, but it is sometimes unavoidable when you need this kind of output, and it can only be produced on that kind of system …

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SpringerImages: Scientific images for the masses (of subscribers)

July 9th, 2009 by dario

Springer launched yesterday a new service allowing users to search, browse, annotate and reuse scientific images from their huge database of publications.
springerimages

SpringerImages is a growing collection of scientific images that spans the scientific, technical and medical fields, including high-quality clinical images from images.MD. The continually updated collection – currently over 1.5 million images – gathers photos, graphs, histograms, figures, and tables, and is available to libraries and their patrons via a searchable online database. The SpringerImages interface enables users to search faster, more broadly and more accurately, through captions, keywords, context and more, even jumping from the image to the source article. Users can create personalized image “sets,” and can easily export images for use in their own presentations or lectures.

The service offers a range of potentially innovative features.
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