Author Archive

100+ Places to Find Funding For Your Research | OEDb

Thursday, July 24th, 2008

The people at the Online education database have put together a list of resources for academics to get funding. While most of the usual suspects are there, you may find new options. It’s US-centric, so if you are outside the US you may not find it as appealing. It’d be nice if someone could put together a list like this for other locations
100+ Places to Find Funding For Your Research | OEDb

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A centralized repository for academic journals: it’d need to borrow credibility from those established in the field

Monday, July 21st, 2008

Today I found a comment (again in hacker news!) that is very relevant to the discussion we are having here. I’m going to repost it, but credit goes to the author mlinsey. We have discussed in the past how soft peer review could change the landscape in science. The original model of peer review worked well when there were few submissions to journals and people communicated by snail mail, but it’s getting crazy for our current environment. Dario proposed an alternative, and mlinsey presents a similar one, maybe even more radical. Enjoy.

The whole journal system itself is broken. My university’s Math & CS library dropped its subscriptions to several journals a few years ago because they cost too much. Even though they picked the least important/prestigious journals, at one of the top CS departments in the country, this should not happen. And this is to say nothing of a lone individual who wants to benefit from research and teach himself some of it. They can hardly pay to subscribe to any of these journals.

And think about what a journal provides: a forum for researchers to submit the results of their research and a mechanism for selecting which of the submissions are worthwhile for folks in the field to know about.

What I just described is essentially just a karma system, albeit you would have to find a way to take the credibility of the rater into serious consideration. Assuming you solved the chicken-and-egg problem of getting enough credible people from academia to be raters and to submit their best work to your site (quite a tough problem considering many large universities are much more like big companies, or worse government bureaucracies, than startups), you could totally replace the entire system of academic journals.

Think of all the other free extras you would get by having a web app host all journal articles: at minimum, the process of citing references and looking at the background of a paper could be improved: you could visually trace the findings of the paper you’re looking at all the way back to the founding of the field by what each of it’s references used as references. Search would be a lot better, as would recommendation engines (lots of professors have grad students waste time simply scanning journals for articles that are relevant for their work). If you’re into NLP than you would have a much better dataset and a clear application for doing summarization. And think about the possibilities of social networking or productivity-app type features enabling all sorts of new possibilities for collaboration among people at different universities!

But the real big play is that once you do all this, you’re well on your way to replacing universities themselves, which any undergraduate can tell you are bloated enterprises which spend large amounts of money and pass the costs onto their customers, who accept it because the university system has a monopoly on giving out credentials for people going into the working world.

One of universities main products is research, and in many fields (biology, physics) you need the big backing of university (and government) dollars to support research. In many other fields (math, Computer Science, philosophy) you don’t. Researchers in these fields usually need to somehow pay their living expenses, and the actual equipment expenses are minimal. They mainly need: -a place to find like-minded collaborators -credibility for their work (ie, ability to publish in journals). You could give them both of those things. Now people in these fields wouldn’t even need to choose the career path of grad school and then professorship (in other words, staying their entire life in the university monopoly) in order to contribute their research to humanity’s body of knowledge.

So in other words, what you need is to build a HN/Reddit style voting/peer review system that weights the credibility of the voter heavily. Then you need to find some early adopters who are credible enough to lend your own site credibility. Then you could be well on your way to reinventing the academy in a way that is much more democratic and makes its results much more widely available and usable by the public.

Anyone want to build this? My email address is in my profile. Or just go ahead and use this idea yourself - I just really want to be able to use this service somehow, though probably more as a consumer than a producer of research. Maybe someone who actually went to grad school and had lots of papers published themselves would be in a better position to build this idea.

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Learning the COLEMAK keyboard layout

Sunday, July 20th, 2008

I have determined I want to learn the COLEMAK keyboard layout. The point? It’s not about typing speed. The layout requires far less wrist motion than qwerty, and it feels very confortable. You can see that your hands are not moving much (the author claims that your hands travel 2.2 times more on QWERTY).

IF you spend most of your time using your keyboard (and if you are an academic, chances are you do), this one-time investment of your time might be worth it. We only have a set of hands for life, and if you imagine all the papers you should write in a lifetime stacked, you’ll feel the immediate urge to protect your hands :).

I’m not a touch typist on QWERTY, and wanted to learn touch typing, so I decided to go with COLEMAK instead.

It seems that you can only learn for about an hour and a half a day, and thus it will take a month before you can do any work at all. Some people have tried to go cold-turkey, but I have to get actual work done. If you peruse the forums, there are people posting detailed reports on their experiences.

There are lessons available in the website; one is supposed to go through them till reaching 96% accuracy or more. They recommend against relabeling or reorganizing the keys. Instead, the way to go seems to be to tape a copy of the layout on your monitor, like this:

BTW, If you suffer from back pain I have friends who swear by John Sarno’s book.

I’ll post more on how things go for me on the new layout. The good thing is that it’s not an all-or-none change: I can still do QWERTY when I have to get something done under a deadline.

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What you should read before starting your PhD

Thursday, July 17th, 2008

Here is one of the best summaries of how things can go wrong when one chooses to follow the academic path. I got this from Hacker news. The author of this well-written piece came from the industry, and compares the world he knows with what he encountered at the academia.

Things he finds:

  1. Doing a PhD is lonely
  2. Your picking the right advisor will determine your happiness level more than anything else
  3. The way you code within the academic world has nothing to do with the way people code in the
    industry

But maybe we already know this.

What I’d like to see is someone writing a similar piece on life after your PhD. I had this silly idea that things would be easier and I’d have more time after my PhD Thesis for… you know, hobbies and other stuff normal people do. Nothing farther from reality.

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Who needs theories when one has lots of data?

Tuesday, July 8th, 2008

This article poses an interesting question. Sometimes one has enough data to make accurate predictions without having an understanding of what causes the phenomenon (a model). Nowadays, it’s getting easier and easier to get huge datasets, which are often sufficient to do this.

For example… Google uses massive amounts of misspellings to give ‘on the fly’ corrections. It also uses massive corpora of bilingual texts, such as their French/English translation engine by feeding it Canadian documents which are often released in both English and French versions. But they don’t have any theory of language doing smart stuff in the background.

So are theories redundant, or obsolete, in a world where one can do proper predictions without them?

Wired’s own Chris Anderson explores the idea:

Who knows why people do what they do? The point is they do it, and we can track and measure it with unprecedented fidelity. With enough data, the numbers speak for themselves.

Petabytes allow us to say: "Correlation is enough." We can stop looking for models. We can analyze the data without hypotheses about what it might show.

The point here is that statistics can find patterns in basically any area; so maybe we don’t need an specific science to take care of those problems.

There are issues with this line of thinking. Of course, correlation doesn’t imply causation, so doing just this we’d be blind to cause-effect relationships:

Google’s founding philosophy is that we don’t know why this page is better than that one: If the statistics of incoming links say it is, that’s good enough. No semantic or causal analysis is required.

Comments by Deepak:

We all know that more data means new approaches to science, especially since this has happened so quickly.

We’ve always worked with partial understanding, or in the case of medicine, less than partial understanding, but that’s precisely why medicine is beginning to fail. Not knowing mechanisms, etc is what results in a VIOXX. Not knowing why is what creates the next disaster.

Trying to solve the exact same problems as Google, we have a camp that does think that knowing ‘why’ is important: the semantic web proponents. Under this paradigm, the web would become a huge ontology. And machines would operate with propositions (RDF triplets) to deduce new knowledge. In this case, you do know how the machine reached certain conclusion. They do face the same huge datasets (i.e., try to operate with ‘the entire web’ at some point; not now, since only a small fraction of the sites use RDF at all), but instead of using the raw content that is prepared for human consumption, they will use machine-ready content.

If after plowing though petabytes of data, a semantic search engine reaches an interesting conclusion, at least it can show us the logical path it used. The promise for pharmaceutical companies is that they could find new drugs and interactions by just letting the algorithms traverse a corpus of, say, proteins. But, again, in this case, there is no ‘human’ postulating a theory either.

Probably, what all this means is that we scientists will need to adapt our methods to collaborate with these smart machines. There are things, like deep search, that are better left to them; whereas some other, like tagging images, are really hard for machines but trivial for humans.

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And the academic most likely to accidentally eradicate human life is…

Sunday, July 6th, 2008

Ok, this is just a quick, relaxing post.
In your view who is the academic most likely to accidentally eradicate human life?

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Resistance to boredom as a scientific moral value?

Monday, June 23rd, 2008

Is there a simple explanation for why some people pick up demanding activities (such a career in science) while some others are happy watching television most of their spare time?

Maybe it’s as simple as this: boredom is aversive to everyone, but people differ on when they get so bored they need to do something about it or their head will explode. Let’s call this the boredom threshold. So let’s play with the naive theory that people with a low boredom threshold do science (or art, or some other complex, demanding activities). And let’s assume that mainstream jobs (i. e. those that apply existing knowledge instead of living at the bleeding edge) can get away doing the same things over and over again. This is a caricature, but bear with me.  

Some job descriptions value resistance to boredom. Of course, that’s not in the contract, but it’s implicit. And the humility it takes to take such a job is not only accepted, but encouraged in Western society. It’s almost getting to a point where the trait could suffer natural selection (if our standards lasted a few million years :) ). There are more boring jobs than interesting jobs (i.e., interesting jobs are in the ‘long tail’ of a power-law distribution). People willing to accept a boring job have thus more chances of being employed. More so, most jobs have some boring part, so a caricature of a person that would only take non-boring jobs and would quit as soon as something boring comes up would be kicked out of the gene pool.

(more…)

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Google’s Palimpsest project: Open-Source Science Data

Friday, June 13th, 2008

Google will host large scientific datasets at http://research.google.com. That is, of you have a dataset that is requested constantly, now you can ‘open-source’ it and let google take the server load. Wired has this covered.

For those not seeing the point in having open, portable data, this presentation (Making Massive Datasets Universally Accessible and Useful) is a good an explanation.

How do you ship a large dataset to google? Well, they send you hard drives in a suitcase!:

(Google people) are providing a 3TB drive array (Linux RAID5). The array is provided in “suitcase” and shipped to anyone who wants to send they data to Google. Anyone interested gives Google the file tree, and they SLURP the data off the drive. I believe they can extend this to a larger array (my memory says 20TB).

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A lucid view into 21st-century publishing: who are you writing for?

Wednesday, June 4th, 2008

Sara Lloyd has published a manifesto on the way knowledge is distributed today.

In an ‘always on’ world in which everything is increasingly digital, where content is increasingly fragmented and ‘bite-sized’, where ‘prosumers’ merge the traditionally disparate roles of producer and consumer, where search replaces the library and where multimedia mash-ups -not text- holds the attraction for the digital natives who are growing up fast into the mass market of tomorrow, what role do publishers still have to play and how will they have to evolve to hold on to a continuing role in the writing and reading culture of the future?

This is important since the publishing industry somehow determines how academics allocate their time. If you can communicate your ideas in a way that fits the current standards, you may get them to spread farther.

Another interesting point is how the development of the text itself and the writing and editing process is now often ‘open’: there are ‘beta’ books on the net, and readers, ‘debug’ chapters as soon as the author releases them. This is a fantastic model that could leave professional editors out of the equation and speed up publishing in general. But then, do you really need the paper version of the book when all is said and done? Do you need to make a trip to the library to get it?

Oh, and by the way, Adobe acrobat 9 is out and now you can embed flash (i.e., video) in it. This makes possible to create a book that contains talks; or 3D rotations of a complex data visualization. Yet another reason to pay attention to fully digital book distribution.

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Wired: Why Are Senior Female Scientists So Heavily Outnumbered by Men?

Tuesday, June 3rd, 2008

Anna Kushnir has an interesting letter to Wired where she describes how the proportion of women to men went from 7:1 in grad school to 1:7 in senior academic positions.

What is causing this switch? The comment section has a bunch of hypotheses. Worth a look.

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A solution to wasting time online: set up one computer for web access only, away from your work computer

Monday, May 19th, 2008

Paul Graham does it again. It’s great when you have a mind used to solve problems with simple solutions applied to time management. The more everyday problems hackers manage to solve (this time without use of fancy technology), the better for all of us.

The basic idea is simple: just make your body aware that you are wasting time. It’s even more radical than my interruptron idea of having a time counter growing in size as a function of wasting time.

I can find at least two problems with this idea. Or maybe I’m just trying to rationalize that I don’t want them to pry ‘my precious’ internet from my tired fingers :)

  1. Software updates. I find that I quite often have to do a ’sudo aptitude install’ or some such. At least a couple of times a day. Same for programming languages’ packages. It’d be a pain to switch on the internet for that, plus it’d be tempting to leave it on.
  2. Mail. I often have a quick idea and fire off an email to someone who may need to know or do something about it. My mail reader is integrated with my browser and sending a new mail is just one shortcut away. Again, a bit of a pain to move to a different computer to send a mail.

Still, the advantages are huge. Having no interruptions whatever online? Sounds great. In fact, when I’m really feeling like I need to get something done, I retire to a library with no wireless (and hopefully a comics section to fill scheduled rest time).

I’m interested in this method (2nd computer for internet only) enough to give it a serious try, say a full month.

It’d be great if more people wanted to join a trial, so we can do some n>1 testing on whether this works overall or not. It’d be also great to have some accountability (i.e., people knowing that you are doing this trial, so you feel ashamed if you are not following the rules). The problem is that productivity measures will have to be subjective: i.e., at the end of the month, do you feel you have gotten a lot done? More than any other month while you were online at all times?

What do you think?

PS: there’s a full thread commenting the article here.

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More on drugs that supposedly give you mental superpowers

Thursday, May 15th, 2008

Just as a quick follow-up to this post, … there seems to be a narcolepsy drug that works really well for periods when you need a lot of concentration.

The drug name is provigil. The article is a pretty hard-core testimonial on its effect. There’s an interesting discussion here. The article seems to mention no negative side effects (other than making you eat less!) but in the discussion some people mention serious stuff like : “nervousness, insomnia, excitation, irritability, tremors, dizziness and headaches“.

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Workaholics fixate on inconsequential details (37signals)

Saturday, May 10th, 2008

Extremely productive company 37signals (authors of  Ruby on Rails) have a short workaholicbut interesting post on workaholism. It seems that workaholics actually create situations that require more work. This makes sense. And there are plenty of opportunities to fabricate more work: focus on small, inconsequential details; say yes to things before you have finished what you are currently working on; have no idea how long it’ll take to finish your current project (this is a big one for programming), etc.

The problem is that many work environments actually encourage people to act the workaholic way (and look busy all the time). If your workplace is one of these, there’s little you can do.

I’m still not seeing any stats that prove that non-workaholics get more done than workaholics though :)

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Rethinking life hacks

Friday, March 28th, 2008

“Math is hard; let’s go shopping!”

-hacked Barbie

Summary: It looks like the difficulties of measuring  productivity make people use common sense to give advice on how to improve it instead of actually attacking productivity as a hard problem that needs empirical study. But people do follow barely tested advice on productivity. They are either too busy to afford dismissing it, or too pragmatic to believe that we can reach systematic, scientific productivity techniques.

There is a current craze about productivity in many forms (sometimes disguised as personal development). At least 4 of the top 100 blogs in the blogosphere are about productivity (according 3038597_e5f95e2017_mto technorati’s authority: lifehacker #6; Zen Habits #41; lifehack.org #66 43 Folders #73). There’s a current craze about personal productivity and personal development. The best treatment I have read recently is Cal Newport’s Flak magazine article

In fact, lifehacking is a trend of the 21st century. The idea is to reduce the things that bother you in your life (or reduce the time it takes to complete them) while increasing the quality and quality of the experiences that you like. This is pretty intuitive, but is this a working definition of whatever personal productivity is? Hardly. Today, anything that solves an everyday problem in a clever or non-obvious way might be called a life hack.

Hacks are by definition, unsystematic. Everything goes, as long as it works. This is the contrary to the incremental evolution of scientific thinking. Even though sometimes there are large changes in the form of paradigm shifts, most of the time progress is incremental and lineal.

The advantages are clear: one can build on the knowledge acquired by the previous generation.

But do we have the same incremental progress in personal productivity theories? If there anything remotely similar to a science of productivity? Should people follow only empirically tested advice about productivity?

(more…)

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Matthew Cornell @ ap.com: answers to your academic productivity questions

Sunday, March 23rd, 2008

Hello everyone. Thanks very much for your great questions, and for having me here. Following are my answers, some thoughts on academic productivity, and some ideas from my consulting work with faculty. I hope you find them helpful.

Contents


Background of the problem

What’s the problem? Your jobs are hard. Positions in academia are some of the broadest and most demanding I’ve encountered in my consulting. As my client Mary Deane Sorcinelli [1] points out in her Peer Review article Faculty Development: The Challenge Going Forward (PDF),

The set of tasks expected of faculty is intensifying under increasing pressure to keep up with new directions in teaching and research. Thus, for example, new faculty members may need to develop skills in grant-writing or in designing and offering online courses. Seasoned faculty members may need to keep up with emerging specialties in their fields as well as to engage in more interdisciplinary work.

Further, without excellent self-management skills, people face significant stress trying to achieve distinction as scholars, teachers, and campus citizens. They sacrifice work and life balance, and risk burnout - a big loss for both the academe and the faculty member herself. Fortunately, there’s plenty to hope for. Clients and colleagues have told me that adopting a method to improve productivity is one the best steps academics can take to improve faculty success.

Answers to your questions

Adopting a method without its taking over

As an academic, I have a lot of projects going at once and haven’t been able to maintain the action-based ToDo list over time. How can I keep the productivity process from becoming its own project taking over my time and attention?

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News: happy interruptron user makes video, says his productivity increased by %300

Sunday, March 23rd, 2008

I while ago I designed a simple program to track how often I’m interrupted and to prevent myself from going into a ’shaving Yaks’ excursion every time I have to touch a browser.

The interruptron works by growing in size as your ‘unscheduled break’ (or procrastination escapade) elapses. It can cover your entire screen, so it’s hard to ignore. it also lets you save what you did and plot some basic stats.

It turns out people are actually using it. Even making videos about it:

I wasn’t very impressed myself when I released it to tell you the truth, but this little program seems to be a crowd pleaser. Another user asked for the source and is actually doing a rewrite. I was surprised when he told me about his background: he was the person responsible for the email engine of one of the most trafficked sites on the web. We’ll be working together and probably implementing more features, but don’t hold your breath.

Anyway, I didn’t announce it here in ap.com. Maybe it’s time to do it now.

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Six productivity tips to use social media

Sunday, March 2nd, 2008

How can you take advantage of the current craze about social media? 1814873464_02b8d3f59e_m

The fact is that many people use social media to  build a powerful reputation In any Industry. This article will focus on professional social sites (i.e., linkedIn, biznik) and not on the more leisure-based social sites (mySpace, facebook). Having said that, do not discard the more traditional forums and blogs; making posts in these can get you the same benefits than professional social sites, and they are often more targeted.

1 - Benefits are not immediate

Social networks will look like a supreme waste of time in the short term; the benefits are cumulative and slow. Andy Erickson (linkedIn) says:

For me, it’s sort of like having done all the preparation work for an emergency (fire drills in school, CPR certification) and then being grateful that you did when you finally need it.

This is also true for other forms of name-branding and visibility such as blogging. Having the attention of some people is a great currency that you never know when you are going to need.

(more…)

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Hackers’ comments on Katz’s "Don’t become a scientist" paper

Sunday, February 24th, 2008

There’s an excellent discussion at news.ycombinator on why one should _not_ pursue an academic career. The post started with the ‘don’t become a scientist‘ article by Jonathan I. Katz that we commented before. What I find interesting is that ycombinator represents a population of very smart people (hackers and startup founders) who are not academics but most probably have had offers to go to grad school/take a postdoc, etc and declined them to start a new company.

Some members describe their experience as research programmers for big-name research groups, and it’s not pretty. Menloparkbum says:

Most of the people working there were like people working at any big, lame bureaucratic institution, only they had or were obtaining PhDs. Most of their time was spent surfing the web, sending email, and attending meetings. I have never worked anywhere else where people attended so many meetings.

User amichail says:

Don’t be misled by the promise of freedom in academia. It’s not like that at all. [...]

Unless you get a faculty position at a stellar university (highly unlikely nowadays), the teaching will be depressing. And your research will suffer as a result since you will be in no mood to do it.

Also, unless you plan to do everything yourself for research, you will need to get some funding. But whether you get that funding depends on whether your peers — competitors actually — like what you plan to do.

Not much that we didn’t know here. But why are threads like this surfacing more often recently? Or is it just me who finds them everywhere? I don’t even log into the Chronicle forums because the numbers of complains (’I have no life’) there are depressing. This particular user group (Hackers and startup founders) are perfect examples of people who pick on new trends and evaluate what a market is offering. They seem to be all in agreement: steer away from an academic career.

What do you think?

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Synchronous lecture materials. How?

Saturday, February 23rd, 2008

The efficient academic google group has a thread on a really interesting problem. Any hack addressing this has a high chance of saving several hours per week for those of you who teach.

Given lecture material has three components:

  1. Slides for digital projection (preferable PDFs rather than PowerPoint or Keynote)
  2. Lecture notes to support what I need to say and remember
  3. Lecture handout

I regularly update all three, but I am finding keeping all three in sync to be a bit tedious.

I’m not sure what the solution is, but what I am visualising is some sort of single document, where you  write the lecture handout. I could then update this with new information between presenting the lecture.

If you have a solution, drop by and post it there (or here!).

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Here comes a new challenger in the speed reading arena

Friday, February 22nd, 2008

WordFlashReader has several advantages over the previously analyzed rapidReader: it’s open source, and written in perl. So it works under linux and windows at least. wordflashreader also highlights where you are reading, so one of the downsides of RSVP (disorientation) is mostly gone. Still, you lose the formatting when you read HTML or PDF… and the highlighting didn’t work very well for me. The way cursors change speed make it confusing (I’m too used to move around the document with cursor keys). One nifty idea is to go back one sentence with left control key.

2007-04-02_063104-medium2

As before, of you can test it out and post your thoughts for everyone to see, that’d be great.

Another option we commented before was spreeder.

I’m still looking for the holy Grail that makes my reading more fluid and effective. It looks like this is an interest that I share with many people according to the huge pile of books that amazon lists for ’speed reading’.

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